Spatial and temporal analysis of Phytophthora megakarya epidemic in newly established cacao plantations.
Identifieur interne : 000051 ( Main/Exploration ); précédent : 000050; suivant : 000052Spatial and temporal analysis of Phytophthora megakarya epidemic in newly established cacao plantations.
Auteurs : Minette Mireille Djeumekop Ndoungue [France] ; Marie-Ange Ngo Bieng [France] ; Fabienne Ribeyre [France] ; François Bonnot [France] ; Christian Cilas [France] ; Claire Neema [France] ; G M Ten Hoopen [France]Source :
- Plant disease [ 0191-2917 ] ; 2020.
Abstract
Studying spatial and temporal plant disease dynamics helps to understand pathogen dispersal processes and improve disease control recommendations. In this study, three cacao plots devoid of primary inoculum of Phytophthora megakarya (causal agent of cacao black pod rot disease) upon establishment in 2006 were monitored for presence of disease on a weekly basis from 2009 to 2016. Ripley's K(r) function, join count statistics and Fisher Exact test were used to analyse spatial and temporal disease dynamics. Disease distribution maps showed aggregated disease patterns in all plots although for the years of disease onset, exogenous primary infections were mostly randomly distributed. The K(r) function confirmed these results indicating that inoculum generally disperses only over short distances. Moreover, significant positive spatial autocorrelations showed that diseased trees were often clustered up to a distance of 3-9 m. Temporal disease progression was low, meaning that endogenous inoculum failed to establish itself which is partly explained by rigorous phytosanitation and partly by unfavourable microclimatic conditions for disease development. Since P. megakarya had difficulty establishing itself in the plots, proximity to already infected cacao plantations drove infection dynamics. Thus, isolation of newly established cacao plantations from infected ones and rigorous phytosanitation as a preventive strategy appears to be an effective approach to control black pod for newly established cacao plantations.
DOI: 10.1094/PDIS-09-19-2024-RE
PubMed: 33100151
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mireillendoung2015@yahoo.fr.</nlm:affiliation><country wicri:rule="url">France</country><wicri:regionArea>IRAD, 231172, Yaounde, Cameroon</wicri:regionArea><wicri:noRegion>Cameroon</wicri:noRegion><wicri:noRegion>Cameroon</wicri:noRegion></affiliation></author><author><name sortKey="Ngo Bieng, Marie Ange" sort="Ngo Bieng, Marie Ange" uniqKey="Ngo Bieng M" first="Marie-Ange" last="Ngo Bieng">Marie-Ange Ngo Bieng</name><affiliation wicri:level="1"><nlm:affiliation>CIRAD, 27050, Paris, Île-de-France, France; marie-ange.ngo_bieng@cirad.fr.</nlm:affiliation><country wicri:rule="url">France</country><wicri:regionArea>CIRAD, 27050, Paris, Île-de-France</wicri:regionArea><wicri:noRegion>Île-de-France</wicri:noRegion><wicri:noRegion>Île-de-France</wicri:noRegion></affiliation></author><author><name sortKey="Ribeyre, Fabienne" sort="Ribeyre, Fabienne" uniqKey="Ribeyre F" first="Fabienne" last="Ribeyre">Fabienne Ribeyre</name><affiliation wicri:level="1"><nlm:affiliation>CIRAD, Montpellier, Languedoc-Roussillon, France; 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christian.cilas@cirad.fr.</nlm:affiliation><country wicri:rule="url">France</country><wicri:regionArea>CIRAD, Avenue Agropolis - TA 80/02, Cedex 5, Montpellier, France</wicri:regionArea><wicri:noRegion>France</wicri:noRegion><wicri:noRegion>France</wicri:noRegion></affiliation></author><author><name sortKey="Neema, Claire" sort="Neema, Claire" uniqKey="Neema C" first="Claire" last="Neema">Claire Neema</name><affiliation wicri:level="3"><nlm:affiliation>Montpellier SupAgro, 52813, BDI, Montpellier, France; claire.neema@supagro.fr.</nlm:affiliation><country wicri:rule="url">France</country><wicri:regionArea>Montpellier SupAgro, 52813, BDI, Montpellier</wicri:regionArea><placeName><region type="region">Occitanie (région administrative)</region><region type="old region">Languedoc-Roussillon</region><settlement type="city">Montpellier</settlement></placeName></affiliation></author><author><name sortKey="Ten Hoopen, G M" sort="Ten Hoopen, G M" uniqKey="Ten Hoopen G" first="G M" last="Ten Hoopen">G M Ten Hoopen</name><affiliation><nlm:affiliation>CIRAD Departement Systemes biologiques, 206941, UR Bioagresseurs, Bâtiment D - Bureau 108, TA A-106 / D - Campus international de Baillarguet, Montpellier, France, 34398.</nlm:affiliation><wicri:noCountry code="subField">34398</wicri:noCountry></affiliation><affiliation wicri:level="1"><nlm:affiliation>Cocoa Research Centre, Sir Franck Stockdale Bld, University of the West Indies, St Augustine, Port of Spain, Trinidad and Tobago; tenhoopen@cirad.fr.</nlm:affiliation><country wicri:rule="url">France</country><wicri:regionArea>Cocoa Research Centre, Sir Franck Stockdale Bld, University of the West Indies, St Augustine, Port of Spain</wicri:regionArea><wicri:noRegion>Port of Spain</wicri:noRegion><wicri:noRegion>Port of Spain</wicri:noRegion></affiliation></author></analytic><series><title level="j">Plant disease</title><idno type="ISSN">0191-2917</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Studying spatial and temporal plant disease dynamics helps to understand pathogen dispersal processes and improve disease control recommendations. In this study, three cacao plots devoid of primary inoculum of Phytophthora megakarya (causal agent of cacao black pod rot disease) upon establishment in 2006 were monitored for presence of disease on a weekly basis from 2009 to 2016. Ripley's K(r) function, join count statistics and Fisher Exact test were used to analyse spatial and temporal disease dynamics. Disease distribution maps showed aggregated disease patterns in all plots although for the years of disease onset, exogenous primary infections were mostly randomly distributed. The K(r) function confirmed these results indicating that inoculum generally disperses only over short distances. Moreover, significant positive spatial autocorrelations showed that diseased trees were often clustered up to a distance of 3-9 m. Temporal disease progression was low, meaning that endogenous inoculum failed to establish itself which is partly explained by rigorous phytosanitation and partly by unfavourable microclimatic conditions for disease development. Since P. megakarya had difficulty establishing itself in the plots, proximity to already infected cacao plantations drove infection dynamics. Thus, isolation of newly established cacao plantations from infected ones and rigorous phytosanitation as a preventive strategy appears to be an effective approach to control black pod for newly established cacao plantations.</div></front></TEI><pubmed><MedlineCitation Status="Publisher" Owner="NLM"><PMID Version="1">33100151</PMID><DateRevised><Year>2020</Year><Month>10</Month><Day>26</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">0191-2917</ISSN><JournalIssue CitedMedium="Print"><PubDate><Year>2020</Year><Month>Oct</Month><Day>25</Day></PubDate></JournalIssue><Title>Plant disease</Title><ISOAbbreviation>Plant Dis</ISOAbbreviation></Journal><ArticleTitle>Spatial and temporal analysis of Phytophthora megakarya epidemic in newly established cacao plantations.</ArticleTitle><ELocationID EIdType="doi" ValidYN="Y">10.1094/PDIS-09-19-2024-RE</ELocationID><Abstract><AbstractText>Studying spatial and temporal plant disease dynamics helps to understand pathogen dispersal processes and improve disease control recommendations. In this study, three cacao plots devoid of primary inoculum of Phytophthora megakarya (causal agent of cacao black pod rot disease) upon establishment in 2006 were monitored for presence of disease on a weekly basis from 2009 to 2016. Ripley's K(r) function, join count statistics and Fisher Exact test were used to analyse spatial and temporal disease dynamics. Disease distribution maps showed aggregated disease patterns in all plots although for the years of disease onset, exogenous primary infections were mostly randomly distributed. The K(r) function confirmed these results indicating that inoculum generally disperses only over short distances. Moreover, significant positive spatial autocorrelations showed that diseased trees were often clustered up to a distance of 3-9 m. Temporal disease progression was low, meaning that endogenous inoculum failed to establish itself which is partly explained by rigorous phytosanitation and partly by unfavourable microclimatic conditions for disease development. Since P. megakarya had difficulty establishing itself in the plots, proximity to already infected cacao plantations drove infection dynamics. Thus, isolation of newly established cacao plantations from infected ones and rigorous phytosanitation as a preventive strategy appears to be an effective approach to control black pod for newly established cacao plantations.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Ndoungue</LastName><ForeName>Minette Mireille Djeumekop</ForeName><Initials>MMD</Initials><AffiliationInfo><Affiliation>Montpellier SupAgro, 52813, BDI, UMR-BGPI TA A-54/K Campus International de Baillarguet, Montpellier, France, 34060.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>IRAD, 231172, Yaounde, Cameroon, 2123; mireillendoung2015@yahoo.fr.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ngo Bieng</LastName><ForeName>Marie-Ange</ForeName><Initials>MA</Initials><AffiliationInfo><Affiliation>CIRAD, 27050, Paris, Île-de-France, France; marie-ange.ngo_bieng@cirad.fr.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ribeyre</LastName><ForeName>Fabienne</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>CIRAD, Montpellier, Languedoc-Roussillon, France; fabienne.ribeyre@cirad.fr.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bonnot</LastName><ForeName>François</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>CIRAD, UPR 29, TA 80/03, Avenue Agropolis, MONTPELLIER, France, 34398; francois.bonnot@cirad.fr.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cilas</LastName><ForeName>Christian</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>CIRAD, Avenue Agropolis - TA 80/02, Cedex 5, Montpellier, France, 34398; christian.cilas@cirad.fr.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Neema</LastName><ForeName>Claire</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Montpellier SupAgro, 52813, BDI, Montpellier, France; claire.neema@supagro.fr.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ten Hoopen</LastName><ForeName>G M</ForeName><Initials>GM</Initials><AffiliationInfo><Affiliation>CIRAD Departement Systemes biologiques, 206941, UR Bioagresseurs, Bâtiment D - Bureau 108, TA A-106 / D - Campus international de Baillarguet, Montpellier, France, 34398.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Cocoa Research Centre, Sir Franck Stockdale Bld, University of the West Indies, St Augustine, Port of Spain, Trinidad and Tobago; tenhoopen@cirad.fr.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>10</Month><Day>25</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Plant Dis</MedlineTA><NlmUniqueID>9882809</NlmUniqueID><ISSNLinking>0191-2917</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Causal Agent</Keyword><Keyword MajorTopicYN="N">Crop Type</Keyword><Keyword MajorTopicYN="N">Epidemiology</Keyword><Keyword MajorTopicYN="N">Oomycetes</Keyword><Keyword MajorTopicYN="N">Phytophthora megakarya, primary infections, spatial pattern, temporal evolution, Theobroma cacao</Keyword><Keyword MajorTopicYN="N">Subject Areas</Keyword><Keyword MajorTopicYN="N">Tropical plants</Keyword><Keyword MajorTopicYN="N">disease development and spread</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2020</Year><Month>10</Month><Day>26</Day><Hour>5</Hour><Minute>17</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2020</Year><Month>10</Month><Day>27</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2020</Year><Month>10</Month><Day>27</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>aheadofprint</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">33100151</ArticleId><ArticleId IdType="doi">10.1094/PDIS-09-19-2024-RE</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>France</li></country><region><li>Languedoc-Roussillon</li><li>Occitanie (région administrative)</li></region><settlement><li>Montpellier</li></settlement></list><tree><country name="France"><noRegion><name sortKey="Ndoungue, Minette Mireille Djeumekop" sort="Ndoungue, Minette Mireille Djeumekop" uniqKey="Ndoungue M" first="Minette Mireille Djeumekop" last="Ndoungue">Minette Mireille Djeumekop Ndoungue</name></noRegion><name sortKey="Bonnot, Francois" sort="Bonnot, Francois" uniqKey="Bonnot F" first="François" last="Bonnot">François Bonnot</name><name sortKey="Cilas, Christian" sort="Cilas, Christian" uniqKey="Cilas C" first="Christian" last="Cilas">Christian Cilas</name><name sortKey="Neema, Claire" sort="Neema, Claire" uniqKey="Neema C" first="Claire" last="Neema">Claire Neema</name><name sortKey="Ngo Bieng, Marie Ange" sort="Ngo Bieng, Marie Ange" uniqKey="Ngo Bieng M" first="Marie-Ange" last="Ngo Bieng">Marie-Ange Ngo Bieng</name><name sortKey="Ribeyre, Fabienne" sort="Ribeyre, Fabienne" uniqKey="Ribeyre F" first="Fabienne" last="Ribeyre">Fabienne Ribeyre</name><name sortKey="Ten Hoopen, G M" sort="Ten Hoopen, G M" uniqKey="Ten Hoopen G" first="G M" last="Ten Hoopen">G M Ten Hoopen</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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